PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA05G17300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 314aa    MW: 31558.3 Da    PI: 8.209
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA05G17300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.79.9e-4474172199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++l
  ONIVA05G17300.1  74 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQDL 167
                      7********************************************************************************************* PP

           DUF260  95 allke 99 
                      ++++ 
  ONIVA05G17300.1 168 SRARF 172
                      99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.86173174IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4374170IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAASSSASSL PLSSGSVITV SSSPAVGASS GGGGGGTGSP CAACKFLRRK CQPDCREDAV  60
TAAANTAACG TGSPCAACKF LRRKCQPDCV FAPYFPPDNP QKFVHVHRVF GASNVTKLLN  120
ELHPYQREDA VNSLAYEADM RLRDPVYGCV GVISVLQHQL RQLQQDLSRA RFELSKYQAA  180
VAVSSSNGQA AAAAAMTDHF IGSAVQPNCT QNFISGGGVA AAAIGVGGGA GGGFVNDHHQ  240
FSAVQMLARS YDGESAVARL GGAVNVSGGG GYEFGYSSAM GGAGGPMSGL GPLGGGTFLK  300
PGTAGGGDRP TAAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640070.11e-145PREDICTED: LOB domain-containing protein 6
RefseqXP_015640071.11e-145PREDICTED: LOB domain-containing protein 6
SwissprotQ32SG31e-107LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A0E0HEI70.0A0A0E0HEI7_ORYNI; Uncharacterized protein
STRINGLOC_Os05g34450.11e-144(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.42e-54LBD family protein